This web site hosts data for the paper "Towards a Reference Pecan Genome Sequence" which appears in ISHS Acta Horticulturae 1070: I International Symposium on Pecans and Other Carya in Indigenous and Managed Systems.

Citation:

Jenkins, J., B. Wilson, J. Grimwood, J. Schmutz and L. Grauke (2013). "Towards a reference pecan genome sequence." I International Symposium on Pecans and Other Carya in Indigenous and Managed Systems 1070: 101-108.

Reference 87MX3-2 assembly: Pecan_87MX3-2.fasta.gz

Reference Pawnee assembly: Pecan_Pawnee.fasta.gz

SNP and INDEL calls for three libraries:
87MX3-2_Amplified.GATK.vcf.gz
87MX3-2_Amplified.SNPcontext.gz
87MX3-2_Amplified.INDEL.GATK.vcf.gz
87MX3-2_Amplified.INDEL.SNPcontext.gz

87MX3-2_Unamplified.GATK.vcf.gz
87MX3-2_Unamplified.SNPcontext.gz
87MX3-2_Unamplified.INDEL.GATK.vcf.gz
87MX3-2_Unamplified.INDEL.SNPcontext.dat.gz

Pawnee.GATK.vcf.gz
Pawnee.SNPcontext.dat.gz
Pawnee.INDEL.GATK.vcf.gz
Pawnee.INDEL.SNPcontext.gz

Please email [email protected] if there are questions about this data.